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Microbial solutions for improved root rot resistance to support legume-rich crop rotations

Abstract

Legume cultivation in Switzerland is of high importance to cover the increasing demand for high-quality and domestic plant-based protein for food and feed and to improve soil nutrition through biological nitrogen fixation. However, long crop rotation breaks between legumes, like pea, are currently necessary to prevent the accumulation of soil-borne pathogens, which leads to severe root rot (soil fatigue). 

Even though some pea genotypes perform better than others under root rot stress, the resistance obtained through breeding is not sufficient. Novel approaches like microbiome-mediated resistance might show more success in alleviating root rot. Exploring 252 pea lines with high variation in root rot resistance, we previously identified resistance-associated microbes. 

The aim of the current work is to isolate these fungal and bacterial candidates for microbiome-mediated resistance and test their disease-suppressive potential on the inoculated plant and the next pea plant through plant-soil feedback. The project partners combine their expertise in resistance breeding, microbiome research, plant-microbe interaction, and formulation of microbials to deliver a product prototype compliant with organic regulation. 

The targeted application of microbial inocula is expected to increase yields and income security for Swiss farmers and prevent or reduce the accumulation of soil-borne pathogens, allowing shorter crop rotation breaks. This will increase the domestic supply of high-quality protein for food and feed.

Financing/ Donor
  • Federal Office for Agriculture (FOAG), Switzerland
  • Vontobel Foundation, Switzerland
(Research) Program
  • Dreiklang Foundation for Ecological Research and Education
  • Federal Office for Agriculture (FOAG) – Support for Competence and Innovation Networks
  • Other EU-Institutions
  • Other EU-Institutions
  • Cantons and municipalities
  • Cantons and municipalities
  • Swissaid
  • Swissaid
  • Other public institutions, Switzerland
  • Other public institutions, Switzerland
  • Federal Office for Agriculture (FOAG) – Support for Competence and Innovation Networks
  • Dreiklang Foundation for Ecological Research and Education
  • Foundation Edith Maryon
  • Foundation Edith Maryon
  • Other foundations
  • Other foundations
  • Other economic actors
  • Other economic actors
  • Non-profit associations / organisations
  • Non-profit associations / organisations
  • Federal Office for Agriculture (FOAG) – Plant Breeding
  • Federal Office for Agriculture (FOAG) – Support for agricultural research
  • Federal Office for Agriculture (FOAG) – Support for agricultural research
  • Federal Office for Agriculture (FOAG) – Support for agricultural advice
  • Federal Office for Agriculture (FOAG) – Support for agricultural advice
  • Federal Office for Agriculture (FOAG) – Agricultural Resources Program
  • Federal Office for Agriculture (FOAG) – Agricultural Resources Program
  • Federal Office for Agriculture (FOAG) – Water Protection Program
  • Federal Office for Agriculture (FOAG) – Water Protection Program
  • Federal Office for Agriculture (FOAG) – Plant Breeding
  • Federal Office for Agriculture (FOAG) – Agricultural Marketing
  • Federal Office for Agriculture (FOAG) – Agricultural Marketing
  • Federal Office for Agriculture (FOAG) – Preliminary Assessment of Innovative Projects
  • Federal Office for Agriculture (FOAG) – Preliminary Assessment of Innovative Projects
  • Federal Office for Agriculture (FOAG) – Research and Conservation Projects in Animal Breeding
  • Federal Office for Agriculture (FOAG) – Research and Conservation Projects in Animal Breeding
  • Federal Office for Agriculture (FOAG) – Innovative Projects in Sheep's Wool
  • Federal Office for Agriculture (FOAG) – Innovative Projects in Sheep's Wool
Project partners
  • University of Basel, Switzerland
  • MycoSolutions AG, Switzerland
FiBL project leader/ contact
FiBL project staff
Role of FiBL

Project manager

FiBL project number 25170
Date modified 19.01.2026
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